Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs41306345 chr15:66782048 C/T 1.67E-6 296 21.57 20.77 10.17 KM Plot
CESC rs41315964 chr15:66779698 C/T 1.67E-6 296 21.57 20.77 10.17 KM Plot
CESC rs4144243 chr15:56281748 C/T 4.11E-5 296 19.42 18.45 22.45 KM Plot
CESC rs4238031 chr12:110129697 C/T 1.9E-5 287 14.4 21.27 21.3 KM Plot
CESC rs4246171 chr9:136264731 G/A 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs4246172 chr9:136264865 A/G 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs4338080 chr8:615598 A/G 9.38E-5 293 4.2 21.97 21.23 KM Plot
CESC rs4387301 chr10:81736399 C/T 4.15E-9 298 25.17 16.47 2.62 KM Plot
CESC rs4448252 chr8:615597 A/G 9.38E-5 293 4.2 21.97 21.23 KM Plot
CESC rs4520539 chr10:81740529 C/G 3.45E-9 297 25.17 16.42 2.62 KM Plot
CESC rs45468996 chr10:95434697 T/C 7.18E-5 298 21.3 24.35 7.4 KM Plot
CESC rs4549850 chr9:136265239 T/C 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs459515 chr3:161092351 T/C 7.07E-5 294 28.18 21.27 18.07 KM Plot
CESC rs462514 chr3:161092809 C/T 4.33E-5 299 28.18 21.68 18.07 KM Plot
CESC rs4626931 chr1:52112830 G/C 3.95E-5 292 21.17 25.63 16.97 KM Plot